SCAN
SNP and CNV Annotation Database
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Gene
SNP
Region
LD Annotations
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Enter a gene or a set of genes:
or choose a file with a list of genes:
include gene start, end, and chromosome
include SNPs inside gene and up to
kb from the gene
include SNPs that predict expression with p-value less than
and frequency greater than
for population
All
CEPH -- from northern and western Europe . . .
YRI -- Yoruba in Ibadan, Nigeria . . .
Restrict to eQTLs on the same chromosome
HTML table
comma separated
tab separated
output
sample input file
Enter SNPs (rs numbers):
or choose a file with a list of SNPs:
include SNP info
include host gene and SNP function
include left- and right- flanking genes
include genes that SNP predicts expression for with p-value less than
HTML table
comma separated
tab separated
output format
sample input file
A region can be specified as a chromosome:start:end
or by a pair of SNPs from the same chromosome as snpid1:snpid2
Enter a region or a set of regions:
or choose a file with a list of regions:
include SNPs
include genes
include left- and right- flanking genes
include genes regulated by SNPs in region, with p-value less than
HTML table
comma separated
tab separated
output format
sample input file
Enter list of SNPs here to retrieve genes with variants in LD with given SNPs:
or choose a file:
